Sequence degeneracy - Revision history

Nnjm2: Added the references correctly.

2018-11-05T11:15:18Z

Added the references correctly.

← Older revision		Revision as of 11:15, 5 November 2018
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	*[[Glutamic\|Glutamic]] = 2 possible codons		*[[Glutamic\|Glutamic]] = 2 possible codons

	The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence.		The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence<ref>Bioinformatica.upf.edu. (2005). SNPs in Human Selenoproteins Genes. [online] Available at: http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html [Last accessed 31 Oct. 2018].</ref>.

	Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576		Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576<br>

	=== ~~<br>~~References: ===		=== References ===

	~~Bioinformatica.upf.edu. (2005). ''SNPs in Human Selenoproteins Genes''. [online] Available at: http:~~/~~/bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html [Last accessed 31 Oct. 2018].~~		<references /><br>

160446287: Inserted Reference Header and corrected reference

2018-11-05T11:10:47Z

Inserted Reference Header and corrected reference

← Older revision		Revision as of 11:10, 5 November 2018
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	Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576		Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576

	=== <br>References: ===		=== <br>References: ===

	Bioinformatica.upf.edu. (2005). ''SNPs in Human Selenoproteins Genes''. [online] Available at: http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html [Last accessed 31 Oct. 2018].~~[[Javascript:void(0);/1540564120009/\|void(0);/1540564120009/]]~~		Bioinformatica.upf.edu. (2005). ''SNPs in Human Selenoproteins Genes''. [online] Available at: http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html [Last accessed 31 Oct. 2018].

160446287 at 11:10, 5 November 2018

2018-11-05T11:10:02Z

← Older revision		Revision as of 11:10, 5 November 2018
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	*[[Serine\|Serine]] = 6 possible codons		*[[Serine\|Serine]] = 6 possible codons
	*[[Cysteine\|Cysteine]] = 2 possible codons		*[[Cysteine\|Cysteine]] = 2 possible codons
	*[[Isoleucine\|Isoleucine]] = 3 possible codons		*[[Isoleucine\|Isoleucine]] = 3 possible codons
	*[[Glutamic\|Glutamic]] = 2 possible codons		*[[Glutamic\|Glutamic]] = 2 possible codons
	*[[Asparagine\|Asparagine]] = 2 possible codons		*[[Asparagine\|Asparagine]] = 2 possible codons
	*[[Cysteine\|Cysteine]] = 2 possible codons		*[[Cysteine\|Cysteine]] = 2 possible codons
	*[[Glutamic\|Glutamic]] = 2 possible codons		*[[Glutamic\|Glutamic]] = 2 possible codons

	The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence.		The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence.

	Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576		Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576

	Bioinformatica.upf.edu. (~~2018~~). SNPs in Human Selenoproteins Genes. [online] Available at:~~[[Javascript:void(0);/1540564120009/\|~~http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html ]]		=== <br>References: ===

			Bioinformatica.upf.edu. (2005). ''SNPs in Human Selenoproteins Genes''. [online] Available at: http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html [Last accessed 31 Oct. 2018].[[Javascript:void(0);/1540564120009/\|void(0);/1540564120009/]]

Nnjm2 at 10:46, 30 October 2018

2018-10-30T10:46:19Z

← Older revision		Revision as of 10:46, 30 October 2018
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	Sequence Degeneracy occurs as a result of back translating a [[Protein sequence\|protein sequence]] into a [[DNA sequence\|DNA sequence]]. <br><br>Degeneracy occurs when back translating a [[Protein sequence\|protein sequence]] due to the many different combinations of bases that can create the same [[Amino acid\|amino acid]] sequnce. <br>However [[DNA sequences\|DNA sequences]] with ambiguous bases can be accounted for using the [[IUB\|IUB]] and [[IUB Complement\|complement code]] to work out the correct [[Reverse translation\|reverse translation]]. <br>The protein sequence 'SCIENCE' contains the [[Amino acids\|amino acids]]: Serine, Cysteine, Isoleucine, Glutamic, Asparagine, Cysteine and Glutamic respectively, <br>however as each of these amino acids can be encoded by more than one t[[Triplet code\|riplet]], ambiguity arises. <br><br>In this instance: 'SCIENCE'<br>Serine = 6 possible codons <br>Cysteine = 2 possible codons   <br>Isoleucine = 3 possible codons<br>Glutamic = 2 possible codons    <br>Asparagine = 2 possible codons    <br>Cysteine = 2 possible codons<br>Glutamic = 2 possible codons <br><br>The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence. <br>Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576 <br><br>		Sequence Degeneracy occurs as a result of back translating a [[Protein sequence\|protein sequence]] into a [[DNA sequence\|DNA sequence]].

	Bioinformatica.upf.edu. (2018). SNPs in Human Selenoproteins Genes. [online] Available at:[[Javascript:void(0);/1540564120009/\|http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html~~ ~~]]~~<br>~~		Degeneracy occurs when back translating a [[Protein sequence\|protein sequence]] due to the many different combinations of bases that can create the same [[Amino acid\|amino acid]] sequence.

			However [[DNA sequences\|DNA sequences]] with ambiguous bases can be accounted for using the [[IUB\|IUB]] and [[IUB Complement\|complement code]] to work out the correct [[Reverse translation\|reverse translation]].

			The protein sequence 'SCIENCE' contains the [[Amino acids\|amino acids]]: Serine, Cysteine, Isoleucine, Glutamic, Asparagine, Cysteine and Glutamic respectively, however as each of these amino acids can be encoded by more than one t[[Triplet code\|riplet]], ambiguity arises.

			In this instance: 'SCIENCE'

			*[[Serine\|Serine]] = 6 possible codons
			*[[Cysteine\|Cysteine]] = 2 possible codons
			*[[Isoleucine\|Isoleucine]] = 3 possible codons
			*[[Glutamic\|Glutamic]] = 2 possible codons
			*[[Asparagine\|Asparagine]] = 2 possible codons
			*[[Cysteine\|Cysteine]] = 2 possible codons
			*[[Glutamic\|Glutamic]] = 2 possible codons

			The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence.

			Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576

			Bioinformatica.upf.edu. (2018). SNPs in Human Selenoproteins Genes. [online] Available at:[[Javascript:void(0);/1540564120009/\|http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html ]]

160446287: Took out the mistakes I missed when first making the page.

2018-10-27T14:25:33Z

Took out the mistakes I missed when first making the page.

← Older revision		Revision as of 14:25, 27 October 2018
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	Sequence Degeneracy occurs as a result of back translating a [[Protein sequence\|protein sequence]] into a [[DNA sequence\|DNA sequence]]. <br><br>Degeneracy occurs when back translating a [[Protein sequence\|protein sequence]] due to the many different combinations of bases that can create the same [[Amino acid\|amino acid]] sequnce. <br>However [[DNA sequences\|DNA sequences]] with ambiguous bases can be accounted for using the [[IUB\|IUB]] and [[IUB Complement\|complement code]] to work out the correct [[Reverse translation\|reverse translation]]. <br>~~For example, the~~ protein sequence 'SCIENCE' contains the [[Amino acids\|amino acids]]: Serine, Cysteine, Isoleucine, Glutamic, Asparagine, Cysteine and Glutamic respectively, <br>however as each of these amino acids can be encoded by more than one t[[Triplet code\|riplet]], ambiguity arises. <br><br>In this instance: 'SCIENCE'<br>Serine = 6 possible codons <br>Cysteine = 2 possible codons   <br>Isoleucine = 3 possible codons<br>Glutamic = 2 possible codons    <br>Asparagine = 2 possible codons    <br>Cysteine = 2 possible codons<br>Glutamic = 2 possible codons <br><br>The degeneracy of the sequence can be determined through the ~~multpiplication~~ of the number of possible [[Codons\|codons]] at each amino acid on the sequence. <br>Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576 <br><br>		Sequence Degeneracy occurs as a result of back translating a [[Protein sequence\|protein sequence]] into a [[DNA sequence\|DNA sequence]]. <br><br>Degeneracy occurs when back translating a [[Protein sequence\|protein sequence]] due to the many different combinations of bases that can create the same [[Amino acid\|amino acid]] sequnce. <br>However [[DNA sequences\|DNA sequences]] with ambiguous bases can be accounted for using the [[IUB\|IUB]] and [[IUB Complement\|complement code]] to work out the correct [[Reverse translation\|reverse translation]]. <br>The protein sequence 'SCIENCE' contains the [[Amino acids\|amino acids]]: Serine, Cysteine, Isoleucine, Glutamic, Asparagine, Cysteine and Glutamic respectively, <br>however as each of these amino acids can be encoded by more than one t[[Triplet code\|riplet]], ambiguity arises. <br><br>In this instance: 'SCIENCE'<br>Serine = 6 possible codons <br>Cysteine = 2 possible codons   <br>Isoleucine = 3 possible codons<br>Glutamic = 2 possible codons    <br>Asparagine = 2 possible codons    <br>Cysteine = 2 possible codons<br>Glutamic = 2 possible codons <br><br>The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence. <br>Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576 <br><br>

	Bioinformatica.upf.edu. (2018). SNPs in Human Selenoproteins Genes. [online] Available at:[[Javascript:void(0);/1540564120009/\|http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html ]]<br>		Bioinformatica.upf.edu. (2018). SNPs in Human Selenoproteins Genes. [online] Available at:[[Javascript:void(0);/1540564120009/\|http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html ]]<br>

160446287: Added more detail to the definition and an example of how to work out degeneracy from a protein sequence

2018-10-26T14:35:23Z

Added more detail to the definition and an example of how to work out degeneracy from a protein sequence

← Older revision		Revision as of 14:35, 26 October 2018
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	Sequence Degeneracy is back translating a [[~~protein~~ sequence\|protein sequence]] into a [[DNA sequence\|DNA sequence]].		Sequence Degeneracy occurs as a result of back translating a [[Protein sequence\|protein sequence]] into a [[DNA sequence\|DNA sequence]]. <br><br>Degeneracy occurs when back translating a [[Protein sequence\|protein sequence]] due to the many different combinations of bases that can create the same [[Amino acid\|amino acid]] sequnce. <br>However [[DNA sequences\|DNA sequences]] with ambiguous bases can be accounted for using the [[IUB\|IUB]] and [[IUB Complement\|complement code]] to work out the correct [[Reverse translation\|reverse translation]]. <br>For example, the protein sequence 'SCIENCE' contains the [[Amino acids\|amino acids]]: Serine, Cysteine, Isoleucine, Glutamic, Asparagine, Cysteine and Glutamic respectively, <br>however as each of these amino acids can be encoded by more than one t[[Triplet code\|riplet]], ambiguity arises. <br><br>In this instance: 'SCIENCE'<br>Serine = 6 possible codons <br>Cysteine = 2 possible codons   <br>Isoleucine = 3 possible codons<br>Glutamic = 2 possible codons    <br>Asparagine = 2 possible codons    <br>Cysteine = 2 possible codons<br>Glutamic = 2 possible codons <br><br>The degeneracy of the sequence can be determined through the multpiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence. <br>Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576 <br><br>

			Bioinformatica.upf.edu. (2018). SNPs in Human Selenoproteins Genes. [online] Available at:[[Javascript:void(0);/1540564120009/\|http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html ]]<br>

Nnjm2 at 18:16, 22 October 2018

2018-10-22T18:16:38Z

← Older revision		Revision as of 18:16, 22 October 2018
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	~~ ~~Sequence Degeneracy is back translating a protein sequence into a DNA sequence.		Sequence Degeneracy is back translating a [[protein sequence\|protein sequence]] into a [[DNA sequence\|DNA sequence]].

170468884: Created page with " Sequence Degeneracy is back translating a protein sequence into a DNA sequence. "

2018-10-22T18:12:19Z

Created page with " Sequence Degeneracy is back translating a protein sequence into a DNA sequence. "

New page

 Sequence Degeneracy is back translating a protein sequence into a DNA sequence. 

← Older revision		Revision as of 11:10, 5 November 2018
Line 11:		Line 11:
	*[[Serine\|Serine]] = 6 possible codons		*[[Serine\|Serine]] = 6 possible codons
	*[[Cysteine\|Cysteine]] = 2 possible codons		*[[Cysteine\|Cysteine]] = 2 possible codons
	*[[Isoleucine\|Isoleucine]] = 3 possible codons		*[[Isoleucine\|Isoleucine]] = 3 possible codons
	*[[Glutamic\|Glutamic]] = 2 possible codons		*[[Glutamic\|Glutamic]] = 2 possible codons
	*[[Asparagine\|Asparagine]] = 2 possible codons		*[[Asparagine\|Asparagine]] = 2 possible codons
	*[[Cysteine\|Cysteine]] = 2 possible codons		*[[Cysteine\|Cysteine]] = 2 possible codons
	*[[Glutamic\|Glutamic]] = 2 possible codons		*[[Glutamic\|Glutamic]] = 2 possible codons

	The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence.		The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence.

	Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576		Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576

	Bioinformatica.upf.edu. (~~2018~~). SNPs in Human Selenoproteins Genes. [online] Available at:~~[[Javascript:void(0);/1540564120009/\|~~http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html ]]		=== <br>References: ===

			Bioinformatica.upf.edu. (2005). ''SNPs in Human Selenoproteins Genes''. [online] Available at: http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html [Last accessed 31 Oct. 2018].[[Javascript:void(0);/1540564120009/\|void(0);/1540564120009/]]

← Older revision		Revision as of 10:46, 30 October 2018
Line 1:		Line 1:
	Sequence Degeneracy occurs as a result of back translating a [[Protein sequence\|protein sequence]] into a [[DNA sequence\|DNA sequence]]. <br><br>Degeneracy occurs when back translating a [[Protein sequence\|protein sequence]] due to the many different combinations of bases that can create the same [[Amino acid\|amino acid]] sequnce. <br>However [[DNA sequences\|DNA sequences]] with ambiguous bases can be accounted for using the [[IUB\|IUB]] and [[IUB Complement\|complement code]] to work out the correct [[Reverse translation\|reverse translation]]. <br>The protein sequence 'SCIENCE' contains the [[Amino acids\|amino acids]]: Serine, Cysteine, Isoleucine, Glutamic, Asparagine, Cysteine and Glutamic respectively, <br>however as each of these amino acids can be encoded by more than one t[[Triplet code\|riplet]], ambiguity arises. <br><br>In this instance: 'SCIENCE'<br>Serine = 6 possible codons <br>Cysteine = 2 possible codons   <br>Isoleucine = 3 possible codons<br>Glutamic = 2 possible codons    <br>Asparagine = 2 possible codons    <br>Cysteine = 2 possible codons<br>Glutamic = 2 possible codons <br><br>The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence. <br>Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576 <br><br>		Sequence Degeneracy occurs as a result of back translating a [[Protein sequence\|protein sequence]] into a [[DNA sequence\|DNA sequence]].

	Bioinformatica.upf.edu. (2018). SNPs in Human Selenoproteins Genes. [online] Available at:[[Javascript:void(0);/1540564120009/\|http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html~~ ~~]]~~<br>~~		Degeneracy occurs when back translating a [[Protein sequence\|protein sequence]] due to the many different combinations of bases that can create the same [[Amino acid\|amino acid]] sequence.

			However [[DNA sequences\|DNA sequences]] with ambiguous bases can be accounted for using the [[IUB\|IUB]] and [[IUB Complement\|complement code]] to work out the correct [[Reverse translation\|reverse translation]].

			The protein sequence 'SCIENCE' contains the [[Amino acids\|amino acids]]: Serine, Cysteine, Isoleucine, Glutamic, Asparagine, Cysteine and Glutamic respectively, however as each of these amino acids can be encoded by more than one t[[Triplet code\|riplet]], ambiguity arises.

			In this instance: 'SCIENCE'

			*[[Serine\|Serine]] = 6 possible codons
			*[[Cysteine\|Cysteine]] = 2 possible codons
			*[[Isoleucine\|Isoleucine]] = 3 possible codons
			*[[Glutamic\|Glutamic]] = 2 possible codons
			*[[Asparagine\|Asparagine]] = 2 possible codons
			*[[Cysteine\|Cysteine]] = 2 possible codons
			*[[Glutamic\|Glutamic]] = 2 possible codons

			The degeneracy of the sequence can be determined through the multiplication of the number of possible [[Codons\|codons]] at each amino acid on the sequence.

			Degeneracy in this case is: 6 x 2 x 3 x 2 x 2 x 2 x 2 = 576

			Bioinformatica.upf.edu. (2018). SNPs in Human Selenoproteins Genes. [online] Available at:[[Javascript:void(0);/1540564120009/\|http://bioinformatica.upf.edu/2005/projectes05/3.2.4/material.html ]]