SMART: Difference between revisions
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'''SMART''' (a '''S'''imple '''M'''odular '''A'''rchitecture '''R'''esearch '''T'''ool) is an online tool which allows the identification of | '''SMART''' (a '''S'''imple '''M'''odular '''A'''rchitecture '''R'''esearch '''T'''ool) is an online tool which allows the identification of [[Protein_domain|protein domains]] and the analysis of domain architecture. | ||
You may use either a [[Uniprot|Uniprot]] [[Ensembl sequence identifier|Ensembl sequence identifier]] (ID) / [[Accession number|accession number]] (ACC) or the [[ | You may use either a [[Uniprot|Uniprot]] [[Ensembl sequence identifier|Ensembl sequence identifier]] (ID) / [[Accession number|accession number]] (ACC) or the [[Protein|protein]] sequence itself to perform the SMART analysis service. | ||
Using the accession number or the name of a known protein domain, SMART will allow you to search a particular domain, and give you a detailed description of this domain. | Using the accession number or the name of a known protein domain, SMART will allow you to search a particular domain, and give you a detailed description of this domain. | ||
Here is a link to the homepage of the site:[http://smart.embl-heidelberg.de/ http://smart.embl-heidelberg.de/] | Here is a link to the homepage of the site:[http://smart.embl-heidelberg.de/ http://smart.embl-heidelberg.de/] | ||
More information about the site, and further literature relating to its use can be found here: [http://smart.embl-heidelberg.de/help/smart_about.shtml http://smart.embl-heidelberg.de/help/smart_about.shtml] | More information about the site, and further literature relating to its use can be found here: [http://smart.embl-heidelberg.de/help/smart_about.shtml http://smart.embl-heidelberg.de/help/smart_about.shtml] | ||
NB: This online tool is extremely useful (and expected to be used) when completing the bioinformatics module in stage 2 (CMB2005) | NB: This online tool is extremely useful (and expected to be used) when completing the bioinformatics module in stage 2 (CMB2005) | ||
Revision as of 04:09, 25 October 2013
SMART (a Simple Modular Architecture Research Tool) is an online tool which allows the identification of protein domains and the analysis of domain architecture.
You may use either a Uniprot Ensembl sequence identifier (ID) / accession number (ACC) or the protein sequence itself to perform the SMART analysis service.
Using the accession number or the name of a known protein domain, SMART will allow you to search a particular domain, and give you a detailed description of this domain.
Here is a link to the homepage of the site:http://smart.embl-heidelberg.de/
More information about the site, and further literature relating to its use can be found here: http://smart.embl-heidelberg.de/help/smart_about.shtml
NB: This online tool is extremely useful (and expected to be used) when completing the bioinformatics module in stage 2 (CMB2005)