DNA Extraction and Purification
Extraction of DNA from a source organism (animal, plants or microbes) is easier when compared to using the same technique to isolate RNA.This is because DNA is very stable and is the same in all cells of multicellular organism. The key steps in genomic DNA isolation are:
1) Disruption of cell membranes(animal cells)/cell walls(plant cells)
This can be done using two approaches;
A) Physical Approaches
i) Sonication: the process of directing vibration generated from a mechanical process towards a substance(e.g DNA). Bacteria cells containing DNA are subjected to sonication to break the cell membranes and release the DNA proteins. An equipment known as a Sonicator is used for this process.
ii) Shearing: this is the accidental tearing apart of long DNA molecules during laboratory preparations. It may also be done intentionally.
B) Chemical Approaches
This is the use of enzymes such as lysozyme and detergents on cell components or cytosolic domains to cause lysis of the cells. Lysozyme is often added to detergents in this process because of its ability to digest cell wall components of gram-positive bacteria
2) Low speed centrifugation of isolated cells to remove debris
3) Addition of Ribonuclease to destroy RNA
4) Removal of contaminants by mixing with equal volumes of phenol/chloroform. This denatures proteins and they are precipitated to form an interface layer in the test tube.
5) Concentration of DNA by precipitation
This is done by adding 2 volumes of ethanol plus 0.2M NaCl.
6) Measurement of DNA concentration
This can be done by using either of these two methods;
i) Absorbance method
ii) Flourescence method
However,the simplest is the absorbance method which is carried using Spectrophotometry. This uses a simple laboratory equipment called Spectrophotometer including UV lamp, transparent curvettes and a solution of purified DNA. Absorbance readings is taken at 260nm,this is because DNA absorbs light more at this wavelength.