These core histones come together to form octamers that makeup chromatin. H3 and H4 form a dimer and then interact with another H3/H4 dimer to form a H3/H4 tetramer. H2A and H2B also interact to form dimers. The central H3/H4 tetramer interacts with 2 flanking H2A/H2B dimers to form an octamer which forms chromatin. Approximately, DNA is wrapped around a histone twice with around 147 base pairs around it.
DNA chromatin interaction
Double-stranded DNA interacts with the molecule of chromatin by wrapping around the chromatin molecule twice, forming a single nucleosome. The DNA passes between individual nucleosomes, forming the 10nm fibre. The linker Histone H1 binds to the DNA between individual nucleosomes and compacts the nucleosomes into a fibre approx 30nm in diameter.
This method can compact a genome of 2m in length (human genome) into the nucleus of a single cell.
Modification of chromatin structure
But the action of nucleosome packaging means that transcription is inhibited as most of the DNA bound to the chromatin is inaccessible. This, therefore, requires nucleosome structure to be modulated in order to make certain strands of DNA accessible to transcription molecules such as RNA polymerase. Such methods of chromatin structure modulation include:
These are post-translation modifications which are applied to the N terminals of the histone molecules that make up the chromatin. These N terminals protrude from the nucleosome structure and are easily accessible.
These modifications are thought to act as beacons for other proteins with bromodomains to interact with the histones to make the DNA accessible to the required proteins within the cell.