Refresher Summary
By now you:
- have revisited how to run PubMed
searches and find numerous papers - have found out how to search for the paper for a given reference
- should know how to download a full paper
- will know how to find information on a paper
- have found a paper for a given DOI (and found a DOI for a specific paper
- have covered searched the sequence database for a given sequence
- have run a BLAST search for a protein sequence
- know how to interpret the BLAST results
- carried out Prosite, Interpro, Pfam and SMART searches to find functional motifs in a protein
We will now start to look at:
- GEO DataSets - Gene Expression Omnibus (GEO) repository
- GEO2R - A tool for comparing GEO datasets
- DAVID Bioinformatics Resources - Database for Annotation, Visualization and Integrated Discovery (DAVID)
- Ensembl Biomart
- STRING
Before embarking on the assessment.